PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family YABBY
Protein Properties Length: 192aa    MW: 21627.4 Da    PI: 8.5899
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016700genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY213.38.2e-6661664170
      YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse.kls 102
                +s+ eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhC++l svn+a a q l+ ++    +  ++ +   +   +++++   ++++ ++++++   ++
  Cla016700   6 NSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS---QASNHSHSGSG--ADHYRVELGSSSKCNNKMKMRaPIK 100
                6789**********************************************999999986...33344333333..3333333333333333222220333 PP

      YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                ++++++ +r   ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl
  Cla016700 101 NSTTDHDQR--IINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 166
                333333333..479****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-718166IPR006780YABBY protein
SuperFamilySSF470956.55E-8108159IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.2E-4120158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC NNLFDIVTVR CGHCSNLWSV NMAAAFQSLS  60
WQNSQASNHS HSGSGADHYR VELGSSSKCN NKMKMRAPIK NSTTDHDQRI INRPPEKRQR  120
VPSAYNQFIK EEIQRIKATN PDITHREAFS TAAKNWAHFP HIHFGLMLDT NNLQTKNDGS  180
EKHLMSVPGL HY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677432e-52KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBankKJ6677452e-52KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBankKJ6677472e-52KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139305.11e-138PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW464e-82YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD7TC401e-104D7TC40_VITVI; Putative uncharacterized protein
STRINGVIT_11s0016g05590.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-83YABBY family protein